RT Conference Proceedings
T1 A new tool to search tumor samples for research across Europe: BIOPOOL - Poster
A1 Sáiz, Mónica
A1 Belar, Oihana
A1 de Jong, Bas
A1 Kap, Marcel
A1 Bereciartua, Arantza
A1 Ruiz, Rebeca
A1 Viguri, Maria Amparo
A1 Rezola, Ricardo
A1 de Miguel, Eduardo
A1 Saiz, Alberto
A1 Fernández, Sara
A1 Gaafar, Ayman
A1 Catón, Blanca
A1 Aguirre, Javier
A1 Doukas, Michael
A1 Muñoz, Elena
A1 Gandon, Fabienne
A1 Riegman, Peter
A1 Bilbao, Roberto
AB Objective: Searching tissues for research across biobanks and pathology departments is complicated due to the geographically dispersed distribution, diagnosis heterogeneity, language diversity and lack of online robust samples catalogues. BIOPOOL consortium (www.biopoolproject.eu) was created to give a solution based on a new search approach similar to Google images but focused on histological images and associated clinical databases. The project is funded by the 7FP of the European Commission (GA296162). Method: Digital images from colon, breast and lung cancer were used to develop the software. Eleven pathologists worked closely with IT developers. They defined the technical and functional requirements of the final system, and the identification and validation of the key visual features and regions of interest on the histological images and their associated data.Relevant visual descriptors were identified, coded and extracted automatically from the images in order to be included in the searching tool and retrieved later in the case it matches the query.Results: A new web-based search portal was developed to find tumor samples across biobanks based on query by image and/or text. The legal and ethical issues were taken in consideration.Conclusion: BIOPOOL network, is now open to biobanks and pathology departments to bring together, in a European scale, a research infrastructure that could help to conduct research through the synergy of medical knowledge and technology.
PB Springer
SN 1432-2307
YR 2015
FD 2015
LK http://hdl.handle.net/11556/241
UL http://hdl.handle.net/11556/241
LA eng
NO Conference: 26th European Congress of Pathology (ECP 2014), At London, United Kingdom, Volume: Virchows Archiv (2014) 465 (Suppl 1):S1–S379
NO European Commission FP7
DS TECNALIA Publications
RD 17 jul 2024